Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c4/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c4
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c4
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c4_mean_pred_corrected float

liu2026Multiomics_Stomach_c4_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c4_mean_pred_corrected [0.00285, 25.7]
n
104,870,371
mean
0.24
sd
0.475

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1048703713.27% 104870280
chr1 10079982 4.05% 10079971
chr2 8538410 3.53% 8538400
chr3 6872308 3.47% 6872305
chr4 5045147 2.65% 5045141
chr5 5253579 2.89% 5253578
chr6 6532300 3.82% 6532298
chr7 5284456 3.32% 5284450
chr8 4498582 3.10% 4498579
chr9 4583731 3.31% 4583728
chr10 4807596 3.59% 4807589
chr11 5561626 4.12% 5561624
chr12 5164203 3.87% 5164199
chr13 2586024 2.26% 2586021
chr14 3350457 3.13% 3350455
chr15 3481471 3.41% 3481467
chr16 3451270 3.82% 3451267
chr17 4744978 5.70% 4744974
chr18 2273816 2.83% 2273813
chr19 3923116 6.69% 3923111
chr20 2816358 4.37% 2816355
chr21 1405959 3.01% 1405957
chr22 2105686 4.14% 2105682
chrX 2355923 1.51% 2355923
chrY 153393 0.27% 153393
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 104870280 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c4__mean_pred_corrected.bw 794.6 MB 680442146eebe67c7121ca6b0b5eee1f
genomic_resource.yaml 1.28 KB 63b9382b4f6192562a12c5460a306b63
statistics/