Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c5/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Stomach for cell cluster c5
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c5
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c5_mean_counts_contribs float

liu2026Multiomics_Stomach_c5_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Stomach_c5_mean_counts_contribs [-0.0546, 0.147]
n
127,888,988
mean
0.000213
sd
0.00365

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1278889883.98% 127037937
chr1 12341649 4.96% 12259795
chr2 10061442 4.15% 9993900
chr3 7756592 3.91% 7703862
chr4 5685653 2.99% 5645324
chr5 6636044 3.66% 6591628
chr6 7421389 4.34% 7371953
chr7 6583711 4.13% 6539669
chr8 5460697 3.76% 5424382
chr9 5666847 4.09% 5629695
chr10 6212976 4.64% 6171243
chr11 6992934 5.18% 6947527
chr12 6074024 4.56% 6033862
chr13 2890335 2.53% 2870798
chr14 4108305 3.84% 4081237
chr15 4303821 4.22% 4274970
chr16 4633061 5.13% 4603807
chr17 6314351 7.58% 6273107
chr18 2554950 3.18% 2536133
chr19 5508379 9.40% 5474459
chr20 3515083 5.45% 3492178
chr21 1468329 3.14% 1458651
chr22 2706929 5.33% 2689786
chrX 2962234 1.90% 2942985
chrY 29253 0.05% 26986
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 127037937 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Stomach_c5__mean_counts_contribs.bw 786.41 MB 72fb87abc43212cbd77263be5b34bae8
genomic_resource.yaml 1.32 KB e054e3260170a8143fee1b47a1ed5d86
statistics/