Resource
| Id | summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c5/mean_counts_contribs |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | mean_counts_contribs for Stomach for cell cluster c5 |
| Description |
Downloaded from: https://zenodo.org/records/15066651. Description of the data and download instructions can be found https://github.com/GreenleafLab/HDMA/blob/main/DATA.md |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| liu2026Multiomics_Stomach_c5_mean_counts_contribs | float |
liu2026Multiomics_Stomach_c5_mean_counts_contribs |
base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
|
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[-0.0546, 0.147] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 127888988 | 3.98% | 127037937 |
| chr1 | 12341649 | 4.96% | 12259795 |
| chr2 | 10061442 | 4.15% | 9993900 |
| chr3 | 7756592 | 3.91% | 7703862 |
| chr4 | 5685653 | 2.99% | 5645324 |
| chr5 | 6636044 | 3.66% | 6591628 |
| chr6 | 7421389 | 4.34% | 7371953 |
| chr7 | 6583711 | 4.13% | 6539669 |
| chr8 | 5460697 | 3.76% | 5424382 |
| chr9 | 5666847 | 4.09% | 5629695 |
| chr10 | 6212976 | 4.64% | 6171243 |
| chr11 | 6992934 | 5.18% | 6947527 |
| chr12 | 6074024 | 4.56% | 6033862 |
| chr13 | 2890335 | 2.53% | 2870798 |
| chr14 | 4108305 | 3.84% | 4081237 |
| chr15 | 4303821 | 4.22% | 4274970 |
| chr16 | 4633061 | 5.13% | 4603807 |
| chr17 | 6314351 | 7.58% | 6273107 |
| chr18 | 2554950 | 3.18% | 2536133 |
| chr19 | 5508379 | 9.40% | 5474459 |
| chr20 | 3515083 | 5.45% | 3492178 |
| chr21 | 1468329 | 3.14% | 1458651 |
| chr22 | 2706929 | 5.33% | 2689786 |
| chrX | 2962234 | 1.90% | 2942985 |
| chrY | 29253 | 0.05% | 26986 |
| 431 contigs with no values (121016273 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 127037937 | 1 | 2114 | 1.01 | 1 |
Files
| Filename | Size | md5 |
|---|---|---|
| Stomach_c5__mean_counts_contribs.bw | 786.41 MB | 72fb87abc43212cbd77263be5b34bae8 |
| genomic_resource.yaml | 1.32 KB | e054e3260170a8143fee1b47a1ed5d86 |
| statistics/ |
