Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c5/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c5
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c5
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c5_mean_pred_corrected float

liu2026Multiomics_Stomach_c5_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c5_mean_pred_corrected [0.0033, 20.5]
n
68,604,799
mean
0.197
sd
0.341

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 686047992.14% 68603854
chr1 6645944 2.67% 6645942
chr2 5367134 2.22% 5367134
chr3 4135642 2.09% 4135641
chr4 3027233 1.59% 3027232
chr5 3529307 1.94% 3529306
chr6 3971212 2.32% 3971211
chr7 3502533 2.20% 3502533
chr8 2903727 2.00% 2903726
chr9 3041150 2.20% 3041148
chr10 3314514 2.48% 3314513
chr11 3782021 2.80% 3782020
chr12 3259615 2.45% 3259615
chr13 1535260 1.34% 1535260
chr14 2211461 2.07% 2211459
chr15 2303830 2.26% 2303829
chr16 2504263 2.77% 2504263
chr17 3427730 4.12% 3427730
chr18 1353356 1.68% 1353356
chr19 3042966 5.19% 3042965
chr20 1886938 2.93% 1886938
chr21 787452 1.69% 787452
chr22 1451980 2.86% 1451980
chrX 1602986 1.03% 1602986
chrY 16545 0.03% 15615
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 68603854 1 547 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c5__mean_pred_corrected.bw 518.65 MB d2770abffb6c14cc6a53920f1976e255
genomic_resource.yaml 1.28 KB e57a3222973afcd5c5666ba2fdd8bff1
statistics/