Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c6/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Stomach for cell cluster c6
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c6
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c6_mean_counts_contribs float

liu2026Multiomics_Stomach_c6_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Stomach_c6_mean_counts_contribs [-0.0647, 0.154]
n
155,544,734
mean
0.000273
sd
0.00372

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1555447344.85% 154453964
chr1 14726544 5.92% 14623859
chr2 12632028 5.22% 12543847
chr3 10203238 5.15% 10130504
chr4 7774943 4.09% 7717855
chr5 8783460 4.84% 8721742
chr6 9512359 5.57% 9445798
chr7 7892743 4.95% 7836125
chr8 7211578 4.97% 7161036
chr9 6617854 4.78% 6572364
chr10 7942205 5.94% 7887711
chr11 8011373 5.93% 7956611
chr12 7577060 5.69% 7524726
chr13 3946993 3.45% 3918599
chr14 4910531 4.59% 4876165
chr15 5043150 4.94% 5008087
chr16 4956474 5.49% 4923129
chr17 6606178 7.93% 6559857
chr18 3362916 4.18% 3337823
chr19 5445001 9.29% 5408645
chr20 4039884 6.27% 4012305
chr21 1849777 3.96% 1836022
chr22 2698156 5.31% 2679996
chrX 3750946 2.40% 3724242
chrY 49343 0.09% 46916
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 154453964 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Stomach_c6__mean_counts_contribs.bw 957.61 MB fafa3cbe746dcb22b21ceca5cb750bc6
genomic_resource.yaml 1.32 KB 4737399949dff9d447b0750374ca6fd4
statistics/