Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c6/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c6
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c6
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c6_mean_pred_corrected float

liu2026Multiomics_Stomach_c6_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c6_mean_pred_corrected [0.00278, 17.8]
n
82,835,600
mean
0.165
sd
0.301

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 828356002.58% 82834647
chr1 7869173 3.16% 7869170
chr2 6694928 2.76% 6694924
chr3 5390358 2.72% 5390355
chr4 4118972 2.17% 4118971
chr5 4662843 2.57% 4662841
chr6 5065396 2.97% 5065394
chr7 4174421 2.62% 4174421
chr8 3808195 2.62% 3808194
chr9 3545528 2.56% 3545528
chr10 4231661 3.16% 4231658
chr11 4284315 3.17% 4284314
chr12 4043636 3.03% 4043635
chr13 2080002 1.82% 2080001
chr14 2624787 2.45% 2624787
chr15 2688928 2.64% 2688927
chr16 2643582 2.93% 2643582
chr17 3562828 4.28% 3562828
chr18 1774516 2.21% 1774516
chr19 2983785 5.09% 2983783
chr20 2150335 3.34% 2150333
chr21 978836 2.10% 978835
chr22 1430823 2.82% 1430823
chrX 2001080 1.28% 2001078
chrY 26672 0.05% 25749
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 82834647 1 911 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c6__mean_pred_corrected.bw 626.46 MB bc16286b61647f80df60503538647f90
genomic_resource.yaml 1.28 KB 8dbd806fe08f9075947a51c468da7089
statistics/