Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c7/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Stomach for cell cluster c7
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c7
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c7_mean_counts_contribs float

liu2026Multiomics_Stomach_c7_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Stomach_c7_mean_counts_contribs [-0.0524, 0.167]
n
131,387,760
mean
0.000194
sd
0.00347

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1313877604.09% 130490275
chr1 13129011 5.27% 13039258
chr2 10481414 4.33% 10409315
chr3 8552379 4.31% 8492658
chr4 6028871 3.17% 5984956
chr5 6596229 3.63% 6551053
chr6 7681578 4.50% 7628809
chr7 6686561 4.20% 6640456
chr8 5571368 3.84% 5533234
chr9 5755244 4.16% 5717319
chr10 6525586 4.88% 6480180
chr11 7088990 5.25% 7041288
chr12 6625567 4.97% 6581430
chr13 3100345 2.71% 3078631
chr14 4404738 4.11% 4374588
chr15 4397703 4.31% 4367933
chr16 4487408 4.97% 4458756
chr17 6053264 7.27% 6013299
chr18 2571279 3.20% 2551743
chr19 5071181 8.65% 5039106
chr20 3375873 5.24% 3353635
chr21 1361368 2.91% 1352010
chr22 2591040 5.10% 2574253
chrX 3185686 2.04% 3163772
chrY 65077 0.11% 62593
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 130490275 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Stomach_c7__mean_counts_contribs.bw 808.02 MB 61d5d3857d1ef27fd1a3e583be81d508
genomic_resource.yaml 1.32 KB 17635aa7141a341da1a096702083bacb
statistics/