Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c7/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c7
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c7
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c7_mean_pred_corrected float

liu2026Multiomics_Stomach_c7_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c7_mean_pred_corrected [0.00214, 29]
n
70,110,273
mean
0.199
sd
0.396

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 701102732.18% 70109319
chr1 7025497 2.82% 7025493
chr2 5573662 2.30% 5573660
chr3 4526261 2.28% 4526259
chr4 3205639 1.69% 3205638
chr5 3505965 1.93% 3505965
chr6 4105789 2.40% 4105788
chr7 3550967 2.23% 3550967
chr8 2945766 2.03% 2945765
chr9 3083979 2.23% 3083977
chr10 3477504 2.60% 3477502
chr11 3796527 2.81% 3796525
chr12 3551948 2.67% 3551946
chr13 1640175 1.43% 1640175
chr14 2355672 2.20% 2355671
chr15 2336961 2.29% 2336959
chr16 2396499 2.65% 2396499
chr17 3268010 3.93% 3268009
chr18 1355785 1.69% 1355783
chr19 2769879 4.73% 2769879
chr20 1791450 2.78% 1791450
chr21 723908 1.55% 723908
chr22 1376766 2.71% 1376766
chrX 1707323 1.09% 1707323
chrY 38341 0.07% 37412
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 70109319 1 910 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c7__mean_pred_corrected.bw 531.23 MB 7abe6e05e27184345f2749d49e66b868
genomic_resource.yaml 1.28 KB 24fcfbd6d0ae823c754f29b566422a06
statistics/