Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c8/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Stomach for cell cluster c8
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c8
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c8_mean_counts_contribs float

liu2026Multiomics_Stomach_c8_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Stomach_c8_mean_counts_contribs [-0.08, 0.17]
n
153,929,493
mean
0.000253
sd
0.00359

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1539294934.80% 152911043
chr1 15105767 6.07% 15006817
chr2 12246332 5.06% 12164211
chr3 9755088 4.92% 9688381
chr4 7037295 3.70% 6986823
chr5 8003623 4.41% 7949572
chr6 8972922 5.25% 8912980
chr7 7789666 4.89% 7737883
chr8 6620801 4.56% 6576454
chr9 6851465 4.95% 6807101
chr10 7575652 5.66% 7524380
chr11 8605413 6.37% 8551052
chr12 7492359 5.62% 7442700
chr13 3797020 3.32% 3770842
chr14 4924836 4.60% 4891933
chr15 4894429 4.80% 4861973
chr16 5318565 5.89% 5285860
chr17 7059764 8.48% 7016330
chr18 3085038 3.84% 3062284
chr19 6073381 10.36% 6036609
chr20 4223539 6.55% 4196623
chr21 1856302 3.97% 1844137
chr22 3147792 6.19% 3128463
chrX 3446945 2.21% 3424493
chrY 45499 0.08% 43142
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 152911043 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Stomach_c8__mean_counts_contribs.bw 947.1 MB e0b2ff2dd7cb4e55af7b68bf2f606d2d
genomic_resource.yaml 1.32 KB fc8183baf331b10c57256fa0b3d26a6a
statistics/