Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c8/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c8
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c8
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c8_mean_pred_corrected float

liu2026Multiomics_Stomach_c8_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c8_mean_pred_corrected [0.00289, 28.4]
n
81,981,551
mean
0.229
sd
0.477

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 819815512.55% 81980569
chr1 8066891 3.24% 8066890
chr2 6493515 2.68% 6493509
chr3 5159436 2.60% 5159434
chr4 3725077 1.96% 3725077
chr5 4234888 2.33% 4234881
chr6 4787504 2.80% 4787502
chr7 4126003 2.59% 4126003
chr8 3493200 2.41% 3493199
chr9 3646726 2.64% 3646725
chr10 4024643 3.01% 4024639
chr11 4622399 3.42% 4622398
chr12 3995971 3.00% 3995969
chr13 2003285 1.75% 2003285
chr14 2628743 2.46% 2628741
chr15 2600594 2.55% 2600593
chr16 2845722 3.15% 2845719
chr17 3810049 4.58% 3810049
chr18 1631097 2.03% 1631096
chr19 3319008 5.66% 3319007
chr20 2238036 3.47% 2238032
chr21 986628 2.11% 986628
chr22 1672524 3.29% 1672523
chrX 1844452 1.18% 1844451
chrY 25160 0.04% 24219
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 81980569 1 911 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c8__mean_pred_corrected.bw 620.4 MB 8377f77be51bd387071498425d2c31af
genomic_resource.yaml 1.28 KB 381b0d4a531f64f04678d886e57b38bc
statistics/