Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c9/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Stomach for cell cluster c9
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c9
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c9_mean_counts_contribs float

liu2026Multiomics_Stomach_c9_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Stomach_c9_mean_counts_contribs [-0.0668, 0.159]
n
159,068,488
mean
0.000239
sd
0.0036

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1590684884.96% 158000285
chr1 15501895 6.23% 15398679
chr2 12562004 5.19% 12476846
chr3 9734312 4.91% 9667197
chr4 7113444 3.74% 7062632
chr5 8566490 4.72% 8507810
chr6 8859428 5.19% 8799194
chr7 8470281 5.32% 8412428
chr8 6979492 4.81% 6932305
chr9 6736437 4.87% 6692194
chr10 7769735 5.81% 7717779
chr11 8863658 6.56% 8806472
chr12 8002060 6.00% 7948508
chr13 3786548 3.31% 3760321
chr14 4958658 4.63% 4925530
chr15 5091788 4.99% 5057593
chr16 5593222 6.19% 5556651
chr17 7606430 9.14% 7555949
chr18 3364244 4.19% 3339404
chr19 6225391 10.62% 6186434
chr20 4608629 7.15% 4578553
chr21 1820931 3.90% 1808603
chr22 3536626 6.96% 3514099
chrX 3278955 2.10% 3257506
chrY 37830 0.07% 37598
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 158000285 1 996 1.01 1
global segment-length histogram

Files

Filename Size md5
Stomach_c9__mean_counts_contribs.bw 977.16 MB a1fab33bdf2867d4b052a208a1a58748
genomic_resource.yaml 1.32 KB 043beff89955543ab230d29bda97c46f
statistics/