Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c9/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c9
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c9
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c9_mean_pred_corrected float

liu2026Multiomics_Stomach_c9_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c9_mean_pred_corrected [0.000878, 25.1]
n
84,792,767
mean
0.219
sd
0.436

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 847927672.64% 84792734
chr1 8290082 3.33% 8290080
chr2 6662031 2.75% 6662029
chr3 5148962 2.60% 5148957
chr4 3773248 1.98% 3773246
chr5 4525587 2.49% 4525583
chr6 4728061 2.77% 4728060
chr7 4483660 2.81% 4483658
chr8 3686545 2.54% 3686543
chr9 3592556 2.60% 3592554
chr10 4127203 3.08% 4127203
chr11 4749502 3.52% 4749500
chr12 4264353 3.20% 4264352
chr13 1990950 1.74% 1990949
chr14 2657635 2.48% 2657634
chr15 2718400 2.67% 2718399
chr16 2983843 3.30% 2983843
chr17 4121565 4.95% 4121564
chr18 1774322 2.21% 1774322
chr19 3420132 5.83% 3420130
chr20 2447558 3.80% 2447557
chr21 961265 2.06% 961265
chr22 1886427 3.71% 1886427
chrX 1777104 1.14% 1777103
chrY 21776 0.04% 21776
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 84792734 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c9__mean_pred_corrected.bw 641.07 MB add72e6ae97cebf81110811733bcef1b
genomic_resource.yaml 1.28 KB 2aa765bed69e31c4ce9bd3f723d6b2a9
statistics/