Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c0/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thymus for cell cluster c0
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c0
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c0_mean_counts_contribs float

liu2026Multiomics_Thymus_c0_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thymus_c0_mean_counts_contribs [-0.0954, 0.245]
n
170,124,415
mean
0.000307
sd
0.00415

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1701244155.30% 169239023
chr1 16230590 6.52% 16145865
chr2 13791927 5.69% 13719781
chr3 11211034 5.65% 11150720
chr4 6998584 3.68% 6958130
chr5 8073753 4.45% 8031241
chr6 9889497 5.79% 9838193
chr7 8343125 5.24% 8300081
chr8 6960778 4.80% 6924382
chr9 7078266 5.11% 7040421
chr10 8099737 6.05% 8057023
chr11 7987104 5.91% 7947434
chr12 8651076 6.49% 8606314
chr13 4221370 3.69% 4199092
chr14 5940688 5.55% 5909683
chr15 5662498 5.55% 5633539
chr16 6071232 6.72% 6041962
chr17 8513508 10.23% 8470065
chr18 3331058 4.14% 3311638
chr19 7118469 12.14% 7085701
chr20 4750176 7.37% 4726945
chr21 2234006 4.78% 2222461
chr22 3951873 7.78% 3933465
chrX 5005216 3.21% 4978575
chrY 8850 0.02% 6312
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 169239023 1 2508 1.01 1
global segment-length histogram

Files

Filename Size md5
Thymus_c0__mean_counts_contribs.bw 1.02 GB fce325e20407a888020005b7085c44cf
genomic_resource.yaml 1.31 KB 994e7fa9e21be44f578182f4a86f34bd
statistics/