Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c0/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Thymus for cell cluster c0
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c0
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c0_mean_pred_corrected float

liu2026Multiomics_Thymus_c0_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Thymus_c0_mean_pred_corrected [0.00186, 174]
n
94,831,516
mean
0.624
sd
1.62

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 948315162.95% 94830165
chr1 9042507 3.63% 9042504
chr2 7665545 3.17% 7665542
chr3 6209279 3.13% 6209277
chr4 3862725 2.03% 3862722
chr5 4490624 2.47% 4490624
chr6 5537492 3.24% 5537490
chr7 4653934 2.92% 4653932
chr8 3842224 2.65% 3842222
chr9 3932877 2.84% 3932875
chr10 4516929 3.38% 4516928
chr11 4462722 3.30% 4462720
chr12 4819926 3.62% 4819924
chr13 2351777 2.06% 2351776
chr14 3328057 3.11% 3328055
chr15 3145752 3.08% 3145752
chr16 3410367 3.78% 3410366
chr17 4824262 5.79% 4824260
chr18 1825616 2.27% 1825616
chr19 4024397 6.87% 4024394
chr20 2645061 4.10% 2645059
chr21 1242008 2.66% 1242008
chr22 2211865 4.35% 2211865
chrX 2781176 1.78% 2781173
chrY 4394 0.01% 3081
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 94830165 1 364 1 1
global segment-length histogram

Files

Filename Size md5
Thymus_c0__mean_pred_corrected.bw 718.93 MB 689f6db6c1f056cd75f8800e49f089e4
genomic_resource.yaml 1.28 KB e0383b88ff2437b80c14cad51d43be22
statistics/