Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c1/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Thymus for cell cluster c1
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c1
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c1_mean_pred_corrected float

liu2026Multiomics_Thymus_c1_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Thymus_c1_mean_pred_corrected [0.00186, 132]
n
134,313,891
mean
0.662
sd
1.84

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1343138914.19% 134312858
chr1 12703826 5.10% 12703818
chr2 11386428 4.70% 11386420
chr3 8876877 4.48% 8876874
chr4 5917865 3.11% 5917860
chr5 6840647 3.77% 6840637
chr6 8216489 4.81% 8216484
chr7 6759290 4.24% 6759285
chr8 5874461 4.05% 5874457
chr9 5539887 4.00% 5539886
chr10 6688989 5.00% 6688988
chr11 6449908 4.77% 6449906
chr12 6833356 5.13% 6833350
chr13 3376371 2.95% 3376370
chr14 4563044 4.26% 4563033
chr15 4330270 4.25% 4330267
chr16 4463175 4.94% 4463172
chr17 6274673 7.54% 6274669
chr18 2740517 3.41% 2740513
chr19 4871154 8.31% 4871152
chr20 3596244 5.58% 3596244
chr21 1706850 3.65% 1706849
chr22 2872609 5.65% 2872608
chrX 3428961 2.20% 3428956
chrY 2000 <0.01% 1060
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 134312858 1 728 1 1
global segment-length histogram

Files

Filename Size md5
Thymus_c1__mean_pred_corrected.bw 1016.64 MB b8a9ea3d2b4eefe76f0e1d905bd56693
genomic_resource.yaml 1.28 KB c09df254076adc525567430aed741083
statistics/