Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c10/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thymus for cell cluster c10
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c10
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c10_mean_counts_contribs float

liu2026Multiomics_Thymus_c10_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thymus_c10_mean_counts_contribs [-0.0334, 0.0849]
n
99,555,697
mean
7.64e-05
sd
0.00279

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 995556973.10% 98641828
chr1 9937503 3.99% 9846405
chr2 8054014 3.33% 7978655
chr3 6291438 3.17% 6231753
chr4 4276080 2.25% 4233030
chr5 5063961 2.79% 5016720
chr6 5731983 3.36% 5678706
chr7 4951835 3.11% 4906023
chr8 4305957 2.97% 4265987
chr9 4276155 3.09% 4237078
chr10 4811967 3.60% 4767732
chr11 5417298 4.01% 5369098
chr12 4967700 3.73% 4922866
chr13 2164412 1.89% 2143786
chr14 3101771 2.90% 3073611
chr15 3320041 3.26% 3289267
chr16 3476087 3.85% 3445994
chr17 4896766 5.88% 4854082
chr18 1861841 2.32% 1842871
chr19 4477527 7.64% 4440711
chr20 2597554 4.03% 2574172
chr21 1067250 2.28% 1057610
chr22 2139477 4.21% 2120923
chrX 2367080 1.52% 2344748
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 98641828 1 968 1.01 1
global segment-length histogram

Files

Filename Size md5
Thymus_c10__mean_counts_contribs.bw 611.65 MB fceb7e11c9bcc09fd06895dcadf9bd68
genomic_resource.yaml 1.32 KB cebf3333ea9b03454b20f0c365736e0e
statistics/