Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c11/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thymus for cell cluster c11
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c11
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c11_mean_counts_contribs float

liu2026Multiomics_Thymus_c11_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thymus_c11_mean_counts_contribs [-0.0491, 0.148]
n
169,658,814
mean
0.000276
sd
0.00393

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1696588145.29% 168497003
chr1 16257475 6.53% 16146656
chr2 14266284 5.89% 14166359
chr3 11450204 5.77% 11368677
chr4 7589482 3.99% 7533382
chr5 8861059 4.88% 8798366
chr6 10409766 6.09% 10337546
chr7 8569144 5.38% 8509754
chr8 7462205 5.14% 7409876
chr9 7056513 5.10% 7006809
chr10 8463078 6.33% 8404645
chr11 8386234 6.21% 8330214
chr12 8573552 6.43% 8514389
chr13 4152309 3.63% 4122718
chr14 5551037 5.19% 5513263
chr15 5394402 5.29% 5358174
chr16 5731753 6.34% 5695574
chr17 7825829 9.40% 7775703
chr18 3442510 4.28% 3418547
chr19 6292590 10.73% 6254826
chr20 4398291 6.82% 4369553
chr21 1995160 4.27% 1981509
chr22 3428688 6.75% 3407346
chrX 4101249 2.63% 4073117
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 168497003 1 952 1.01 1
global segment-length histogram

Files

Filename Size md5
Thymus_c11__mean_counts_contribs.bw 1.02 GB 52667abb375840e0408677194b40816c
genomic_resource.yaml 1.32 KB 29f18777c6c21be279ee1a10766da392
statistics/