Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c11/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Thymus for cell cluster c11
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c11
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c11_mean_pred_corrected float

liu2026Multiomics_Thymus_c11_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Thymus_c11_mean_pred_corrected [0.00145, 17.8]
n
89,422,158
mean
0.125
sd
0.278

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 894221582.79% 89422124
chr1 8587503 3.45% 8587501
chr2 7484577 3.09% 7484574
chr3 5996240 3.02% 5996239
chr4 3983259 2.09% 3983257
chr5 4631390 2.55% 4631389
chr6 5495282 3.22% 5495281
chr7 4514181 2.83% 4514180
chr8 3902331 2.69% 3902328
chr9 3701756 2.67% 3701755
chr10 4449835 3.33% 4449834
chr11 4423617 3.27% 4423616
chr12 4531398 3.40% 4531396
chr13 2177738 1.90% 2177736
chr14 2938180 2.74% 2938180
chr15 2837629 2.78% 2837628
chr16 3047989 3.37% 3047989
chr17 4195778 5.04% 4195775
chr18 1790714 2.23% 1790712
chr19 3398772 5.80% 3398769
chr20 2316462 3.59% 2316462
chr21 1048621 2.24% 1048621
chr22 1805514 3.55% 1805514
chrX 2163392 1.39% 2163388
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 89422124 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Thymus_c11__mean_pred_corrected.bw 678.26 MB 5d59a074bac262844ff590a40b805d6d
genomic_resource.yaml 1.28 KB 399bfc7770f6fe287872d4c1dc732a50
statistics/