Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c12/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thymus for cell cluster c12
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c12
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c12_mean_counts_contribs float

liu2026Multiomics_Thymus_c12_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thymus_c12_mean_counts_contribs [-0.0376, 0.122]
n
121,597,724
mean
0.000159
sd
0.00328

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1215977243.79% 120635239
chr1 11684762 4.69% 11592009
chr2 9718724 4.01% 9640469
chr3 7927373 4.00% 7863004
chr4 5088528 2.68% 5045403
chr5 6153176 3.39% 6103009
chr6 7294045 4.27% 7235330
chr7 5919745 3.72% 5873177
chr8 5044148 3.48% 5003365
chr9 5033087 3.64% 4992178
chr10 5990366 4.48% 5943513
chr11 6042707 4.47% 5995637
chr12 6328355 4.75% 6277788
chr13 2848523 2.49% 2825048
chr14 4166161 3.89% 4133045
chr15 3963459 3.89% 3932291
chr16 4280115 4.74% 4248368
chr17 6280120 7.54% 6232670
chr18 2208899 2.75% 2190872
chr19 5345862 9.12% 5307870
chr20 3334224 5.17% 3308528
chr21 1428554 3.06% 1417347
chr22 2585425 5.09% 2566157
chrX 2931366 1.88% 2908161
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 120635239 1 972 1.01 1
global segment-length histogram

Files

Filename Size md5
Thymus_c12__mean_counts_contribs.bw 746.78 MB e9618b838abda94de8dd02bf103f5bd7
genomic_resource.yaml 1.32 KB cfc8dc65ceb09f6273948459b267a5d4
statistics/