Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c12/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Thymus for cell cluster c12
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c12
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c12_mean_pred_corrected float

liu2026Multiomics_Thymus_c12_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Thymus_c12_mean_pred_corrected [0.00189, 8.35]
n
63,005,140
mean
0.0827
sd
0.15

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 630051401.96% 63005122
chr1 6056046 2.43% 6056045
chr2 5022519 2.07% 5022514
chr3 4079837 2.06% 4079836
chr4 2628680 1.38% 2628680
chr5 3180361 1.75% 3180357
chr6 3789835 2.22% 3789835
chr7 3061825 1.92% 3061825
chr8 2606742 1.80% 2606742
chr9 2601466 1.88% 2601466
chr10 3105202 2.32% 3105199
chr11 3138411 2.32% 3138411
chr12 3277088 2.46% 3277088
chr13 1465976 1.28% 1465976
chr14 2157254 2.02% 2157252
chr15 2045825 2.01% 2045824
chr16 2230430 2.47% 2230430
chr17 3282192 3.94% 3282192
chr18 1130357 1.41% 1130356
chr19 2829769 4.83% 2829769
chr20 1724385 2.68% 1724385
chr21 737125 1.58% 737125
chr22 1333804 2.62% 1333804
chrX 1520011 0.97% 1520011
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63005122 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Thymus_c12__mean_pred_corrected.bw 477.83 MB 4bcaf907a15f0ce665b999c3a4e192ec
genomic_resource.yaml 1.28 KB 30edb95bac88abd6208b38361fa8b674
statistics/