Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c13/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thymus for cell cluster c13
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c13
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c13_mean_counts_contribs float

liu2026Multiomics_Thymus_c13_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thymus_c13_mean_counts_contribs [-0.0284, 0.0797]
n
115,164,147
mean
3.66e-05
sd
0.00261

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1151641473.59% 114008371
chr1 10751265 4.32% 10642828
chr2 9498664 3.92% 9401840
chr3 7714831 3.89% 7635597
chr4 5618542 2.95% 5558581
chr5 6176699 3.40% 6113684
chr6 7047696 4.13% 6976344
chr7 5958051 3.74% 5897661
chr8 5184051 3.57% 5130735
chr9 4848045 3.50% 4798949
chr10 5520538 4.13% 5465154
chr11 5729939 4.24% 5673752
chr12 5844249 4.39% 5785767
chr13 3048272 2.67% 3016414
chr14 3859806 3.61% 3821357
chr15 3617164 3.55% 3581052
chr16 3622506 4.01% 3588299
chr17 5132242 6.16% 5082891
chr18 2262633 2.82% 2238700
chr19 4387621 7.49% 4348721
chr20 2768849 4.30% 2742073
chr21 1376111 2.95% 1362501
chr22 2147289 4.23% 2126874
chrX 3049084 1.95% 3018597
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 114008371 1 952 1.01 1
global segment-length histogram

Files

Filename Size md5
Thymus_c13__mean_counts_contribs.bw 706.8 MB 63da6b92b1b2cf6edf09462c8d1e8510
genomic_resource.yaml 1.32 KB 6468546600564881ad5aa10da6cd821f
statistics/