Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c14/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thymus for cell cluster c14
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c14
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c14_mean_counts_contribs float

liu2026Multiomics_Thymus_c14_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thymus_c14_mean_counts_contribs [-0.0348, 0.0858]
n
88,168,899
mean
4.24e-05
sd
0.00254

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 881688992.75% 87317309
chr1 8732623 3.51% 8649216
chr2 6910179 2.85% 6842686
chr3 5657624 2.85% 5601668
chr4 3757370 1.98% 3717920
chr5 4317690 2.38% 4274935
chr6 5015531 2.94% 4965505
chr7 4430472 2.78% 4387279
chr8 3657385 2.52% 3621819
chr9 3829030 2.77% 3792706
chr10 4207547 3.14% 4165977
chr11 4726436 3.50% 4681753
chr12 4228901 3.17% 4188008
chr13 1912817 1.67% 1893408
chr14 2852282 2.66% 2824710
chr15 3060604 3.00% 3030556
chr16 3144683 3.48% 3116373
chr17 4524630 5.43% 4483055
chr18 1654476 2.06% 1637785
chr19 4060941 6.93% 4024758
chr20 2241586 3.48% 2220426
chr21 1023905 2.19% 1014056
chr22 2113226 4.16% 2093994
chrX 2108961 1.35% 2088716
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 87317309 1 937 1.01 1
global segment-length histogram

Files

Filename Size md5
Thymus_c14__mean_counts_contribs.bw 540.93 MB 4782f25a7bc4891ac5e9d2fb164e1369
genomic_resource.yaml 1.32 KB c5667a2bb948143517514598b560175e
statistics/