Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c14/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Thymus for cell cluster c14
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c14
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c14_mean_pred_corrected float

liu2026Multiomics_Thymus_c14_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Thymus_c14_mean_pred_corrected [0.000581, 2.65]
n
44,621,340
mean
0.037
sd
0.0582

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 446213401.39% 44621325
chr1 4432303 1.78% 4432303
chr2 3489917 1.44% 3489916
chr3 2850049 1.44% 2850047
chr4 1900149 1.00% 1900149
chr5 2179197 1.20% 2179196
chr6 2545962 1.49% 2545961
chr7 2230573 1.40% 2230573
chr8 1853089 1.28% 1853087
chr9 1937929 1.40% 1937929
chr10 2122463 1.59% 2122462
chr11 2395333 1.77% 2395332
chr12 2138149 1.60% 2138149
chr13 964856 0.84% 964856
chr14 1443940 1.35% 1443940
chr15 1536097 1.51% 1536097
chr16 1589476 1.76% 1589474
chr17 2310142 2.77% 2310142
chr18 829314 1.03% 829313
chr19 2094937 3.57% 2094935
chr20 1125775 1.75% 1125775
chr21 517222 1.11% 517222
chr22 1061058 2.09% 1061057
chrX 1073410 0.69% 1073410
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44621325 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Thymus_c14__mean_pred_corrected.bw 339.17 MB 1dac8fa854d149dd7c155392dc6f56a2
genomic_resource.yaml 1.28 KB e7b671f71c79636ea379dada1c0d3daf
statistics/