Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c15/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thymus for cell cluster c15
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c15
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c15_mean_counts_contribs float

liu2026Multiomics_Thymus_c15_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thymus_c15_mean_counts_contribs [-0.0274, 0.0927]
n
85,389,385
mean
6.36e-05
sd
0.00284

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 853893852.66% 84648420
chr1 8188348 3.29% 8117370
chr2 6854828 2.83% 6794568
chr3 5451508 2.75% 5402370
chr4 3502324 1.84% 3470673
chr5 4264668 2.35% 4227008
chr6 5260120 3.08% 5213779
chr7 4295306 2.70% 4257731
chr8 3522532 2.43% 3491290
chr9 3461830 2.50% 3431795
chr10 4014499 3.00% 3979606
chr11 4182235 3.10% 4146373
chr12 4346776 3.26% 4308827
chr13 1996193 1.75% 1978103
chr14 2887992 2.70% 2863047
chr15 2699975 2.65% 2676870
chr16 3045450 3.37% 3020758
chr17 4309888 5.18% 4273446
chr18 1603827 2.00% 1589417
chr19 4110929 7.01% 4078201
chr20 2267700 3.52% 2248375
chr21 984470 2.11% 976110
chr22 1916263 3.77% 1900259
chrX 2221724 1.42% 2202444
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 84648420 1 790 1.01 1
global segment-length histogram

Files

Filename Size md5
Thymus_c15__mean_counts_contribs.bw 524.69 MB 0465caa2057d9a322faa31e4ed913e77
genomic_resource.yaml 1.32 KB bafe1a7631b377a03b81e7ef60a734db
statistics/