Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c15/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Thymus for cell cluster c15
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c15
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c15_mean_pred_corrected float

liu2026Multiomics_Thymus_c15_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Thymus_c15_mean_pred_corrected [0.000254, 3.34]
n
43,433,146
mean
0.0385
sd
0.0587

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 434331461.35% 43433136
chr1 4172596 1.68% 4172596
chr2 3483993 1.44% 3483991
chr3 2759038 1.39% 2759038
chr4 1778913 0.94% 1778913
chr5 2174009 1.20% 2174009
chr6 2686605 1.57% 2686605
chr7 2173143 1.36% 2173141
chr8 1785134 1.23% 1785134
chr9 1749652 1.26% 1749652
chr10 2037218 1.52% 2037217
chr11 2129940 1.58% 2129939
chr12 2211437 1.66% 2211437
chr13 1014348 0.89% 1014347
chr14 1468669 1.37% 1468669
chr15 1369340 1.34% 1369340
chr16 1554795 1.72% 1554794
chr17 2210826 2.66% 2210825
chr18 808429 1.01% 808429
chr19 2119068 3.62% 2119067
chr20 1149296 1.78% 1149296
chr21 500141 1.07% 500141
chr22 967829 1.90% 967829
chrX 1128727 0.72% 1128727
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43433136 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Thymus_c15__mean_pred_corrected.bw 329.68 MB de33806e65efe680f8e07e4b886b664c
genomic_resource.yaml 1.28 KB aace21c1b3f32df970e07f70fd44577f
statistics/