Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c17/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thymus for cell cluster c17
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c17
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c17_mean_counts_contribs float

liu2026Multiomics_Thymus_c17_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thymus_c17_mean_counts_contribs [-0.0304, 0.0809]
n
70,287,137
mean
2.8e-05
sd
0.00214

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 702871372.19% 69395490
chr1 8530005 3.43% 8419754
chr2 4344539 1.79% 4290068
chr3 3701910 1.87% 3654605
chr4 2567229 1.35% 2533597
chr5 3015157 1.66% 2976778
chr6 3377451 1.98% 3335406
chr7 2892380 1.82% 2856731
chr8 2355994 1.62% 2325971
chr9 2411218 1.74% 2381766
chr10 5313204 3.97% 5242575
chr11 5386624 3.99% 5315066
chr12 5470802 4.10% 5397116
chr13 3447442 3.01% 3399071
chr14 2078644 1.94% 2052587
chr15 1798687 1.76% 1776926
chr16 2085519 2.31% 2061808
chr17 2779230 3.34% 2747382
chr18 999168 1.24% 986327
chr19 2870179 4.90% 2839246
chr20 1413247 2.19% 1396467
chr21 702391 1.50% 693637
chr22 1154067 2.27% 1140852
chrX 1592050 1.02% 1571754
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 69395490 1 24 1.01 1
global segment-length histogram

Files

Filename Size md5
Thymus_c17__mean_counts_contribs.bw 430.58 MB 89297c601ac152225888b8dd7098df03
genomic_resource.yaml 1.32 KB ccf1d7d970cb4fc6578f0d920448df2a
statistics/