Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c17/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Thymus for cell cluster c17
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c17
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c17_mean_pred_corrected float

liu2026Multiomics_Thymus_c17_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Thymus_c17_mean_pred_corrected [0.000429, 0.762]
n
34,314,296
mean
0.0135
sd
0.021

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 343142961.07% 34314269
chr1 4150415 1.67% 4150412
chr2 2125968 0.88% 2125966
chr3 1810751 0.91% 1810749
chr4 1254606 0.66% 1254603
chr5 1473734 0.81% 1473732
chr6 1668698 0.98% 1668698
chr7 1417241 0.89% 1417241
chr8 1145962 0.79% 1145962
chr9 1176322 0.85% 1176322
chr10 2575604 1.93% 2575602
chr11 2609081 1.93% 2609077
chr12 2651336 1.99% 2651335
chr13 1665362 1.46% 1665360
chr14 1018608 0.95% 1018606
chr15 875924 0.86% 875924
chr16 1027897 1.14% 1027897
chr17 1369539 1.64% 1369538
chr18 484436 0.60% 484435
chr19 1441580 2.46% 1441579
chr20 692299 1.07% 692299
chr21 341733 0.73% 341733
chr22 561826 1.11% 561826
chrX 775374 0.50% 775373
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 34314269 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Thymus_c17__mean_pred_corrected.bw 259.46 MB 565fd95c268d44d4eefdcb71300b9a6a
genomic_resource.yaml 1.28 KB 1cdb319d5e66546a7dd6d4a220c9437a
statistics/