Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c2/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thymus for cell cluster c2
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c2
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c2_mean_counts_contribs float

liu2026Multiomics_Thymus_c2_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thymus_c2_mean_counts_contribs [-0.0872, 0.259]
n
196,064,248
mean
0.000355
sd
0.0046

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1960642486.11% 195203459
chr1 18622133 7.48% 18540332
chr2 16213724 6.69% 16143281
chr3 13076534 6.59% 13017767
chr4 8426131 4.43% 8385808
chr5 9593324 5.28% 9550196
chr6 11566571 6.77% 11516405
chr7 9595169 6.02% 9553418
chr8 8250730 5.68% 8214440
chr9 8027609 5.80% 7990913
chr10 9525664 7.12% 9483622
chr11 9144463 6.77% 9106085
chr12 9833526 7.38% 9790640
chr13 4987451 4.36% 4964760
chr14 6876928 6.42% 6846810
chr15 6500630 6.37% 6472451
chr16 6775092 7.50% 6747537
chr17 9337789 11.22% 9297451
chr18 4081871 5.08% 4061835
chr19 7698325 13.13% 7667936
chr20 5360243 8.32% 5338062
chr21 2537713 5.43% 2526422
chr22 4530072 8.91% 4511802
chrX 5495821 3.52% 5471274
chrY 6735 0.01% 4212
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 195203459 1 2507 1 1
global segment-length histogram

Files

Filename Size md5
Thymus_c2__mean_counts_contribs.bw 1.18 GB 6ceecc2b0bb9784124731d66573b7839
genomic_resource.yaml 1.31 KB dc3feaf881ece96e06185db257039a99
statistics/