Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c2/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Thymus for cell cluster c2
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c2
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c2_mean_pred_corrected float

liu2026Multiomics_Thymus_c2_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Thymus_c2_mean_pred_corrected [0.00136, 133]
n
109,473,873
mean
0.713
sd
1.78

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1094738733.41% 109472495
chr1 10411476 4.18% 10411471
chr2 9048141 3.74% 9048138
chr3 7241552 3.65% 7241548
chr4 4651113 2.45% 4651107
chr5 5331328 2.94% 5331327
chr6 6471682 3.79% 6471682
chr7 5354479 3.36% 5354477
chr8 4569667 3.15% 4569665
chr9 4471771 3.23% 4471768
chr10 5315689 3.97% 5315686
chr11 5110859 3.78% 5110856
chr12 5499156 4.13% 5499153
chr13 2775428 2.43% 2775425
chr14 3858770 3.60% 3858764
chr15 3628479 3.56% 3628479
chr16 3810005 4.22% 3810002
chr17 5302004 6.37% 5302003
chr18 2241310 2.79% 2241308
chr19 4365798 7.45% 4365797
chr20 2984959 4.63% 2984956
chr21 1418168 3.04% 1418167
chr22 2540161 5.00% 2540160
chrX 3068485 1.97% 3068485
chrY 3393 0.01% 2071
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 109472495 1 1303 1 1
global segment-length histogram

Files

Filename Size md5
Thymus_c2__mean_pred_corrected.bw 829.4 MB b24edc468731341ed03107b25fa8643d
genomic_resource.yaml 1.28 KB cef4eacfa9caa9cf34855fce1c21c5cb
statistics/