Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c3/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thymus for cell cluster c3
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c3
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c3_mean_counts_contribs float

liu2026Multiomics_Thymus_c3_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thymus_c3_mean_counts_contribs [-0.0865, 0.248]
n
192,358,204
mean
0.000352
sd
0.00418

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1923582045.99% 191345724
chr1 18569569 7.46% 18472155
chr2 15757982 6.51% 15674880
chr3 12497560 6.30% 12430874
chr4 9047483 4.76% 8996490
chr5 9860900 5.43% 9809321
chr6 10994015 6.44% 10936092
chr7 9750794 6.12% 9697738
chr8 8368366 5.77% 8324471
chr9 8315650 6.01% 8272555
chr10 9665469 7.22% 9614683
chr11 10225634 7.57% 10173730
chr12 9110573 6.84% 9063277
chr13 4471039 3.91% 4446891
chr14 6148211 5.74% 6116559
chr15 6441592 6.32% 6407594
chr16 6404083 7.09% 6371027
chr17 8956637 10.76% 8910808
chr18 3933406 4.89% 3910982
chr19 7052857 12.03% 7016832
chr20 5229923 8.12% 5203246
chr21 2362762 5.06% 2349641
chr22 4322363 8.51% 4300467
chrX 4867108 3.12% 4841204
chrY 4228 0.01% 4207
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 191345724 1 985 1.01 1
global segment-length histogram

Files

Filename Size md5
Thymus_c3__mean_counts_contribs.bw 1.16 GB a28dd37aed0af215380eeb2c850e7465
genomic_resource.yaml 1.31 KB b8836b1a5c9bd9b859414d108e451f41
statistics/