Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c3/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Thymus for cell cluster c3
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c3
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c3_mean_pred_corrected float

liu2026Multiomics_Thymus_c3_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Thymus_c3_mean_pred_corrected [0.00225, 59.5]
n
103,419,035
mean
0.318
sd
0.777

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1034190353.22% 103418971
chr1 10039470 4.03% 10039467
chr2 8435462 3.48% 8435457
chr3 6690721 3.37% 6690717
chr4 4836634 2.54% 4836631
chr5 5285912 2.91% 5285912
chr6 5915794 3.46% 5915790
chr7 5210772 3.27% 5210770
chr8 4460364 3.07% 4460362
chr9 4466628 3.23% 4466623
chr10 5176533 3.87% 5176530
chr11 5526416 4.09% 5526409
chr12 4903748 3.68% 4903747
chr13 2379583 2.08% 2379583
chr14 3317341 3.10% 3317339
chr15 3438993 3.37% 3438990
chr16 3456809 3.83% 3456806
chr17 4900202 5.89% 4900197
chr18 2090401 2.60% 2090401
chr19 3879695 6.62% 3879689
chr20 2793104 4.33% 2793102
chr21 1266489 2.71% 1266489
chr22 2326665 4.58% 2326664
chrX 2619299 1.68% 2619296
chrY 2000 <0.01% 2000
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 103418971 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Thymus_c3__mean_pred_corrected.bw 784.1 MB 5e00d57d2feec9fafcdd92082a53dc5a
genomic_resource.yaml 1.28 KB d5bc7f52f9220ff7f6fe04194ddd8836
statistics/