Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c4/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thymus for cell cluster c4
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c4
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c4_mean_counts_contribs float

liu2026Multiomics_Thymus_c4_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thymus_c4_mean_counts_contribs [-0.0399, 0.122]
n
142,005,214
mean
0.000137
sd
0.00303

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1420052144.42% 140851489
chr1 13904503 5.59% 13793292
chr2 11553081 4.77% 11457652
chr3 9024894 4.55% 8948087
chr4 6244057 3.28% 6187426
chr5 7133857 3.93% 7074329
chr6 8231449 4.82% 8162997
chr7 7055207 4.43% 6997549
chr8 6066796 4.18% 6016048
chr9 6065581 4.38% 6016960
chr10 6996006 5.23% 6939468
chr11 7495963 5.55% 7437663
chr12 6976918 5.23% 6920266
chr13 3247971 2.84% 3220394
chr14 4673960 4.37% 4636187
chr15 4754742 4.66% 4715949
chr16 4877425 5.40% 4841173
chr17 6890462 8.28% 6838312
chr18 2687556 3.34% 2663503
chr19 5995065 10.23% 5952658
chr20 3832549 5.95% 3802865
chr21 1700363 3.64% 1684794
chr22 3273763 6.44% 3249447
chrX 3297580 2.11% 3271253
chrY 25466 0.04% 23217
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 140851489 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Thymus_c4__mean_counts_contribs.bw 871.61 MB 09b7da85cdcc56a049c1965c64e33a44
genomic_resource.yaml 1.31 KB 22b7d3a5e326ff72ae98b62b59fed7a8
statistics/