Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c4/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Thymus for cell cluster c4
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c4
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c4_mean_pred_corrected float

liu2026Multiomics_Thymus_c4_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Thymus_c4_mean_pred_corrected [0.00141, 24.6]
n
74,716,794
mean
0.159
sd
0.338

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 747167942.33% 74715840
chr1 7335513 2.95% 7335511
chr2 6052605 2.50% 6052604
chr3 4715440 2.38% 4715439
chr4 3260344 1.71% 3260344
chr5 3733241 2.06% 3733240
chr6 4348591 2.55% 4348587
chr7 3690633 2.32% 3690632
chr8 3171382 2.19% 3171381
chr9 3181291 2.30% 3181289
chr10 3673484 2.75% 3673483
chr11 3958818 2.93% 3958816
chr12 3670680 2.75% 3670680
chr13 1692619 1.48% 1692619
chr14 2459879 2.30% 2459877
chr15 2487820 2.44% 2487818
chr16 2579590 2.86% 2579589
chr17 3682477 4.42% 3682477
chr18 1398190 1.74% 1398190
chr19 3239861 5.53% 3239858
chr20 2006126 3.11% 2006126
chr21 895809 1.92% 895809
chr22 1714508 3.37% 1714507
chrX 1753969 1.12% 1753969
chrY 13924 0.02% 12995
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 74715840 1 365 1 1
global segment-length histogram

Files

Filename Size md5
Thymus_c4__mean_pred_corrected.bw 566.28 MB 5c06c7dd42196a3ef55ec75fd30c8bb1
genomic_resource.yaml 1.28 KB 7cec7665b29ede112dbc14c275c7170f
statistics/