Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c5/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thymus for cell cluster c5
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c5
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c5_mean_counts_contribs float

liu2026Multiomics_Thymus_c5_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thymus_c5_mean_counts_contribs [-0.0574, 0.136]
n
150,778,902
mean
0.000195
sd
0.00324

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1507789024.70% 149673251
chr1 14457437 5.81% 14352375
chr2 12626147 5.21% 12531718
chr3 9602002 4.84% 9529479
chr4 7037426 3.70% 6981769
chr5 8099344 4.46% 8039109
chr6 8967955 5.25% 8901474
chr7 7595123 4.77% 7538859
chr8 6808912 4.69% 6758221
chr9 6676841 4.82% 6628228
chr10 7668996 5.73% 7612092
chr11 7975289 5.90% 7918447
chr12 7425830 5.57% 7371861
chr13 3678014 3.22% 3650152
chr14 4799786 4.48% 4765363
chr15 4876264 4.78% 4840152
chr16 4708490 5.21% 4675461
chr17 6729641 8.08% 6682960
chr18 3004670 3.74% 2980435
chr19 5653046 9.64% 5616282
chr20 3778114 5.86% 3751234
chr21 1794561 3.84% 1780952
chr22 3024688 5.95% 3003897
chrX 3790326 2.43% 3762731
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 149673251 1 984 1.01 1
global segment-length histogram

Files

Filename Size md5
Thymus_c5__mean_counts_contribs.bw 927.11 MB eb1a440452c990bd85d08231da9075c8
genomic_resource.yaml 1.31 KB 14d0389aec510937676a00003dc74206
statistics/