Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c5/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Thymus for cell cluster c5
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c5
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c5_mean_pred_corrected float

liu2026Multiomics_Thymus_c5_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Thymus_c5_mean_pred_corrected [0.0027, 22.8]
n
80,303,601
mean
0.176
sd
0.342

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 803036012.50% 80303575
chr1 7726584 3.10% 7726580
chr2 6690255 2.76% 6690253
chr3 5074850 2.56% 5074849
chr4 3723326 1.96% 3723325
chr5 4293330 2.36% 4293327
chr6 4795298 2.81% 4795297
chr7 4015078 2.52% 4015078
chr8 3594245 2.48% 3594243
chr9 3557916 2.57% 3557915
chr10 4085066 3.05% 4085063
chr11 4257790 3.15% 4257788
chr12 3963143 2.97% 3963143
chr13 1948317 1.70% 1948316
chr14 2567581 2.40% 2567580
chr15 2595514 2.54% 2595513
chr16 2515362 2.78% 2515362
chr17 3634354 4.37% 3634354
chr18 1589192 1.98% 1589192
chr19 3081023 5.26% 3081023
chr20 2011570 3.12% 2011569
chr21 956637 2.05% 956637
chr22 1601407 3.15% 1601406
chrX 2025763 1.30% 2025762
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 80303575 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Thymus_c5__mean_pred_corrected.bw 607.41 MB 70bd9a1edf542bf463f044c7fb638042
genomic_resource.yaml 1.28 KB 69f34046b3a2543cf2a29e49be0b8c79
statistics/