Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c6/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thymus for cell cluster c6
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c6
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c6_mean_counts_contribs float

liu2026Multiomics_Thymus_c6_mean_counts_contribs
base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
 HISTOGRAM FOR liu2026Multiomics_Thymus_c6_mean_counts_contribs [-0.0851, 0.198]
n
282,043,282
mean
0.000365
sd
0.00427

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2820432828.79% 280325725
chr1 25043017 10.06% 24891089
chr2 23392790 9.66% 23250137
chr3 18504355 9.33% 18388815
chr4 13872541 7.29% 13781560
chr5 15364647 8.46% 15269030
chr6 16936767 9.92% 16832555
chr7 14955994 9.39% 14864527
chr8 13512104 9.31% 13428380
chr9 12230000 8.84% 12155814
chr10 14136844 10.57% 14051331
chr11 13568385 10.04% 13488153
chr12 13668072 10.26% 13584251
chr13 7986362 6.98% 7935971
chr14 9315987 8.70% 9259902
chr15 9208562 9.03% 9153289
chr16 9398648 10.40% 9343838
chr17 11701108 14.05% 11633934
chr18 6882636 8.56% 6837581
chr19 8485868 14.48% 8439180
chr20 7572470 11.75% 7527640
chr21 3663596 7.84% 3641399
chr22 5780731 11.38% 5748063
chrX 6861798 4.40% 6819286
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 280325725 1 977 1.01 1
global segment-length histogram

Files

Filename Size md5
Thymus_c6__mean_counts_contribs.bw 1.7 GB e327f623aece9a5aa3acf53b7191ecc3
genomic_resource.yaml 1.31 KB 988c8eb0be4d5ef0a369ba816a8af08f
statistics/