Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c6/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Thymus for cell cluster c6
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c6
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c6_mean_pred_corrected float

liu2026Multiomics_Thymus_c6_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Thymus_c6_mean_pred_corrected [0.000742, 42.8]
n
151,640,155
mean
0.259
sd
0.641

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1516401554.73% 151639965
chr1 13539402 5.44% 13539387
chr2 12551591 5.18% 12551577
chr3 9891033 4.99% 9891023
chr4 7364647 3.87% 7364637
chr5 8190424 4.51% 8190412
chr6 9106380 5.33% 9106371
chr7 8019908 5.03% 8019896
chr8 7211436 4.97% 7211416
chr9 6583766 4.76% 6583755
chr10 7609957 5.69% 7609949
chr11 7328524 5.43% 7328516
chr12 7350673 5.52% 7350667
chr13 4250718 3.72% 4250712
chr14 5021396 4.69% 5021392
chr15 4958535 4.86% 4958527
chr16 5090732 5.64% 5090730
chr17 6414234 7.70% 6414223
chr18 3651296 4.54% 3651292
chr19 4696391 8.01% 4696387
chr20 4058084 6.30% 4058078
chr21 1960742 4.20% 1960742
chr22 3126517 6.15% 3126515
chrX 3663769 2.35% 3663761
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 151639965 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Thymus_c6__mean_pred_corrected.bw 1.12 GB 7edb3507bf8c8b4354d5c80f09621b5f
genomic_resource.yaml 1.28 KB 2e5bc30cca5a75de28c578a94ae6d8ec
statistics/