Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c7/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thymus for cell cluster c7
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c7
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c7_mean_counts_contribs float

liu2026Multiomics_Thymus_c7_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thymus_c7_mean_counts_contribs [-0.0314, 0.11]
n
134,661,451
mean
0.00014
sd
0.00308

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1346614514.20% 133510666
chr1 13076702 5.25% 12965846
chr2 10914574 4.51% 10820406
chr3 8659984 4.37% 8583505
chr4 6096232 3.20% 6039683
chr5 6966378 3.84% 6905958
chr6 7874510 4.61% 7806399
chr7 6690356 4.20% 6633090
chr8 5626732 3.88% 5578105
chr9 5716421 4.13% 5667603
chr10 6503271 4.86% 6447565
chr11 7213726 5.34% 7153706
chr12 6697563 5.03% 6640487
chr13 3244122 2.84% 3215593
chr14 4301502 4.02% 4265101
chr15 4424978 4.34% 4387247
chr16 4668283 5.17% 4631000
chr17 6384457 7.67% 6332596
chr18 2645741 3.29% 2620675
chr19 5568223 9.50% 5524264
chr20 3707374 5.75% 3676530
chr21 1591987 3.41% 1577389
chr22 2810233 5.53% 2787712
chrX 3275988 2.10% 3248114
chrY 2114 <0.01% 2092
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 133510666 1 1000 1.01 1
global segment-length histogram

Files

Filename Size md5
Thymus_c7__mean_counts_contribs.bw 826.68 MB 751b04878e6be6fcee835126c2c8779e
genomic_resource.yaml 1.31 KB f4f054beed4e561ab4c25d6b3609fa1e
statistics/