Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c7/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Thymus for cell cluster c7
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c7
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c7_mean_pred_corrected float

liu2026Multiomics_Thymus_c7_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Thymus_c7_mean_pred_corrected [0.00248, 12.8]
n
70,334,727
mean
0.111
sd
0.219

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 703347272.19% 70334710
chr1 6853184 2.75% 6853184
chr2 5665657 2.34% 5665657
chr3 4493280 2.27% 4493278
chr4 3154763 1.66% 3154762
chr5 3626779 2.00% 3626774
chr6 4131881 2.42% 4131880
chr7 3481558 2.18% 3481557
chr8 2924371 2.01% 2924371
chr9 2973380 2.15% 2973380
chr10 3384740 2.53% 3384740
chr11 3782661 2.80% 3782661
chr12 3516345 2.64% 3516343
chr13 1685886 1.47% 1685886
chr14 2251807 2.10% 2251806
chr15 2314862 2.27% 2314861
chr16 2444887 2.71% 2444886
chr17 3373903 4.05% 3373903
chr18 1367534 1.70% 1367534
chr19 2981903 5.09% 2981903
chr20 1926555 2.99% 1926554
chr21 826842 1.77% 826842
chr22 1460861 2.87% 1460861
chrX 1710088 1.10% 1710087
chrY 1000 <0.01% 1000
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 70334710 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Thymus_c7__mean_pred_corrected.bw 533.36 MB c464dba9c0c5dcca6bdc37483758e0e4
genomic_resource.yaml 1.28 KB b979b0b68b0eb68465e34a184bda2001
statistics/