Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c8/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thymus for cell cluster c8
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c8
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c8_mean_counts_contribs float

liu2026Multiomics_Thymus_c8_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thymus_c8_mean_counts_contribs [-0.0699, 0.159]
n
100,038,860
mean
0.000144
sd
0.0035

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1000388603.12% 99310204
chr1 9825295 3.95% 9753857
chr2 7845056 3.24% 7787958
chr3 6254596 3.15% 6207670
chr4 4128006 2.17% 4094322
chr5 4856184 2.68% 4820259
chr6 5601794 3.28% 5560436
chr7 5052035 3.17% 5014764
chr8 4079557 2.81% 4049809
chr9 4560197 3.30% 4527797
chr10 4886774 3.65% 4851949
chr11 5587301 4.14% 5548172
chr12 4937229 3.70% 4900873
chr13 2306715 2.02% 2289432
chr14 3249054 3.04% 3225131
chr15 3362729 3.30% 3337896
chr16 3515623 3.89% 3491946
chr17 4960848 5.96% 4926245
chr18 1808917 2.25% 1795504
chr19 4531087 7.73% 4500583
chr20 2803387 4.35% 2783395
chr21 1155321 2.47% 1146858
chr22 2289003 4.50% 2273401
chrX 2440038 1.56% 2421946
chrY 2114 <0.01% 1
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 99310204 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Thymus_c8__mean_counts_contribs.bw 615.4 MB 6d46f2a37946723afb5864c8f6cd1981
genomic_resource.yaml 1.31 KB 4734d6fbafcdeb7c19cb1576b6c2240b
statistics/