Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c8/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Thymus for cell cluster c8
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c8
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c8_mean_pred_corrected float

liu2026Multiomics_Thymus_c8_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Thymus_c8_mean_pred_corrected [0.000881, 7.96]
n
51,939,646
mean
0.0776
sd
0.139

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 519396461.62% 51938676
chr1 5109119 2.05% 5109117
chr2 4065630 1.68% 4065626
chr3 3236305 1.63% 3236300
chr4 2134150 1.12% 2134149
chr5 2517552 1.39% 2517551
chr6 2920258 1.71% 2920258
chr7 2602412 1.63% 2602410
chr8 2107320 1.45% 2107318
chr9 2374096 1.72% 2374094
chr10 2535663 1.90% 2535663
chr11 2907148 2.15% 2907146
chr12 2567387 1.93% 2567385
chr13 1196659 1.05% 1196659
chr14 1693289 1.58% 1693289
chr15 1740086 1.71% 1740086
chr16 1828233 2.02% 1828233
chr17 2594886 3.12% 2594884
chr18 935811 1.16% 935811
chr19 2384998 4.07% 2384998
chr20 1440122 2.23% 1440122
chr21 596345 1.28% 596345
chr22 1178785 2.32% 1178785
chrX 1272392 0.82% 1272391
chrY 1000 <0.01% 56
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 51938676 1 639 1 1
global segment-length histogram

Files

Filename Size md5
Thymus_c8__mean_pred_corrected.bw 394.31 MB 6614796e34bb22053c37e65192b66ea8
genomic_resource.yaml 1.28 KB 7eb83cc77baaecd8e9cb72b18cc59328
statistics/