Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c9/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thymus for cell cluster c9
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c9
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c9_mean_counts_contribs float

liu2026Multiomics_Thymus_c9_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thymus_c9_mean_counts_contribs [-0.0293, 0.0816]
n
91,904,959
mean
4.44e-05
sd
0.00258

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 919049592.86% 91042299
chr1 9329205 3.75% 9242567
chr2 7243956 2.99% 7174218
chr3 5565493 2.81% 5511883
chr4 3827493 2.01% 3788579
chr5 4440287 2.45% 4397551
chr6 5211350 3.05% 5160929
chr7 4449948 2.79% 4407892
chr8 3786051 2.61% 3749709
chr9 3993340 2.89% 3956331
chr10 4295241 3.21% 4254807
chr11 5115948 3.79% 5069124
chr12 4567444 3.43% 4524330
chr13 1958901 1.71% 1939625
chr14 3001696 2.80% 2973849
chr15 3052540 2.99% 3023279
chr16 3342101 3.70% 3312505
chr17 4759271 5.72% 4716933
chr18 1657921 2.06% 1640889
chr19 4607415 7.86% 4568643
chr20 2446235 3.80% 2423679
chr21 1058302 2.27% 1048325
chr22 2185846 4.30% 2166288
chrX 2008975 1.29% 1990364
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 91042299 1 959 1.01 1
global segment-length histogram

Files

Filename Size md5
Thymus_c9__mean_counts_contribs.bw 563.58 MB 3212c70b3ca297d0357e6df459b4334b
genomic_resource.yaml 1.31 KB f07e393dae92c5c9404c9a7df192a6cb
statistics/