Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thymus/c9/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Thymus for cell cluster c9
Description
Labels
  • assay: SHARE-seq
  • cluster: Thymus_c9
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thymus
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thymus_c9_mean_pred_corrected float

liu2026Multiomics_Thymus_c9_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Thymus_c9_mean_pred_corrected [0.00202, 7.76]
n
47,755,476
mean
0.0874
sd
0.143

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 477554761.49% 47755457
chr1 4860705 1.95% 4860702
chr2 3739264 1.54% 3739264
chr3 2883621 1.45% 2883619
chr4 1979990 1.04% 1979990
chr5 2301558 1.27% 2301556
chr6 2725906 1.60% 2725906
chr7 2303680 1.45% 2303680
chr8 1957915 1.35% 1957915
chr9 2065820 1.49% 2065819
chr10 2224185 1.66% 2224185
chr11 2661579 1.97% 2661578
chr12 2377229 1.78% 2377228
chr13 1009015 0.88% 1009014
chr14 1564485 1.46% 1564484
chr15 1580723 1.55% 1580721
chr16 1738211 1.92% 1738210
chr17 2499865 3.00% 2499864
chr18 853830 1.06% 853830
chr19 2448645 4.18% 2448643
chr20 1259939 1.96% 1259939
chr21 551559 1.18% 551558
chr22 1119861 2.20% 1119861
chrX 1047891 0.67% 1047891
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47755457 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Thymus_c9__mean_pred_corrected.bw 362.1 MB 99b504dbe637f1f5c69f56ba5438598d
genomic_resource.yaml 1.28 KB a0d41ec27ce5c61113612b7793fb7734
statistics/