Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thyroid/c0/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thyroid for cell cluster c0
Description
Labels
  • assay: SHARE-seq
  • cluster: Thyroid_c0
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thyroid
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thyroid_c0_mean_counts_contribs float

liu2026Multiomics_Thyroid_c0_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thyroid_c0_mean_counts_contribs [-0.0262, 0.109]
n
117,552,467
mean
8.53e-05
sd
0.0027

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1175524673.66% 116494840
chr1 11345756 4.56% 11244635
chr2 9428291 3.89% 9343485
chr3 7456925 3.76% 7388405
chr4 5494513 2.89% 5440639
chr5 6123431 3.37% 6067624
chr6 6810957 3.99% 6749243
chr7 5934908 3.72% 5880057
chr8 5120025 3.53% 5073747
chr9 5219929 3.77% 5173070
chr10 5688581 4.25% 5637778
chr11 6226133 4.61% 6170654
chr12 5668440 4.25% 5617516
chr13 2892426 2.53% 2864956
chr14 3800692 3.55% 3767187
chr15 3903123 3.83% 3868256
chr16 4136762 4.58% 4101784
chr17 5449152 6.54% 5402889
chr18 2447153 3.04% 2422914
chr19 4731779 8.07% 4693433
chr20 3152710 4.89% 3125339
chr21 1288166 2.76% 1276233
chr22 2365481 4.65% 2345381
chrX 2843096 1.82% 2817874
chrY 24038 0.04% 21741
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 116494840 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Thyroid_c0__mean_counts_contribs.bw 721.96 MB eca70c3e392b045f998ec71f9ec9e125
genomic_resource.yaml 1.32 KB 6d11f1b0e46902bbca54304146fdebe0
statistics/