Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thyroid/c1/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thyroid for cell cluster c1
Description
Labels
  • assay: SHARE-seq
  • cluster: Thyroid_c1
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thyroid
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thyroid_c1_mean_counts_contribs float

liu2026Multiomics_Thyroid_c1_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thyroid_c1_mean_counts_contribs [-0.0346, 0.123]
n
131,921,757
mean
0.000112
sd
0.00291

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1319217574.11% 130794817
chr1 12472791 5.01% 12367420
chr2 10697566 4.42% 10604537
chr3 8438381 4.26% 8364166
chr4 6243262 3.28% 6184926
chr5 6948669 3.83% 6887436
chr6 7816176 4.58% 7747947
chr7 6771047 4.25% 6712003
chr8 5855828 4.03% 5805378
chr9 5727061 4.14% 5679002
chr10 6518547 4.87% 6463287
chr11 6942492 5.14% 6884682
chr12 6390706 4.80% 6335510
chr13 3220163 2.82% 3191135
chr14 4224137 3.95% 4188710
chr15 4258779 4.18% 4222376
chr16 4586200 5.08% 4550269
chr17 5935577 7.13% 5888701
chr18 2840268 3.53% 2813384
chr19 5024526 8.57% 4987007
chr20 3536868 5.49% 3508029
chr21 1522436 3.26% 1509269
chr22 2679796 5.27% 2658800
chrX 3231138 2.07% 3203919
chrY 39343 0.07% 36924
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 130794817 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Thyroid_c1__mean_counts_contribs.bw 810.51 MB 0000ece93e8081a25756c1f0b00b8e7f
genomic_resource.yaml 1.32 KB 64ff0f76f61292616d4d69a7ee60dea0
statistics/