Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thyroid/c2/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thyroid for cell cluster c2
Description
Labels
  • assay: SHARE-seq
  • cluster: Thyroid_c2
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thyroid
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thyroid_c2_mean_counts_contribs float

liu2026Multiomics_Thyroid_c2_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thyroid_c2_mean_counts_contribs [-0.056, 0.167]
n
124,828,028
mean
0.000127
sd
0.00348

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1248280283.89% 123906498
chr1 11682905 4.69% 11596565
chr2 9767347 4.03% 9694754
chr3 7945297 4.01% 7885985
chr4 5937764 3.12% 5890360
chr5 6627232 3.65% 6578194
chr6 7099239 4.16% 7047628
chr7 6287263 3.95% 6241150
chr8 5468812 3.77% 5428612
chr9 5719057 4.13% 5677386
chr10 6040333 4.51% 5995971
chr11 6573539 4.87% 6526162
chr12 5882083 4.41% 5838817
chr13 3131611 2.74% 3107611
chr14 4291740 4.01% 4260493
chr15 4070257 3.99% 4039859
chr16 4586854 5.08% 4554585
chr17 5784019 6.95% 5743965
chr18 2734285 3.40% 2712186
chr19 4661917 7.95% 4629592
chr20 3412892 5.30% 3388947
chr21 1329469 2.85% 1318209
chr22 2598206 5.11% 2580031
chrX 3051290 1.96% 3027998
chrY 144617 0.25% 141438
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 123906498 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Thyroid_c2__mean_counts_contribs.bw 768.48 MB 05b10f900a8e5140b0244c509c667f47
genomic_resource.yaml 1.32 KB 99ba7a193dc1629aca744e51acb1cc66
statistics/