Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thyroid/c3/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Thyroid for cell cluster c3
Description
Labels
  • assay: SHARE-seq
  • cluster: Thyroid_c3
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thyroid
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thyroid_c3_mean_pred_corrected float

liu2026Multiomics_Thyroid_c3_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Thyroid_c3_mean_pred_corrected [0.000219, 3.26]
n
46,915,920
mean
0.0373
sd
0.0648

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 469159201.46% 46914959
chr1 4505897 1.81% 4505895
chr2 3655488 1.51% 3655486
chr3 3024031 1.53% 3024030
chr4 2124455 1.12% 2124454
chr5 2371040 1.31% 2371040
chr6 2735098 1.60% 2735097
chr7 2329806 1.46% 2329806
chr8 1986511 1.37% 1986509
chr9 2146413 1.55% 2146412
chr10 2247753 1.68% 2247753
chr11 2526697 1.87% 2526695
chr12 2301301 1.73% 2301298
chr13 1079825 0.94% 1079825
chr14 1516587 1.42% 1516587
chr15 1568989 1.54% 1568988
chr16 1636042 1.81% 1636041
chr17 2258881 2.71% 2258881
chr18 956946 1.19% 956946
chr19 2081858 3.55% 2081857
chr20 1232772 1.91% 1232770
chr21 520180 1.11% 520180
chr22 971706 1.91% 971706
chrX 1119970 0.72% 1119970
chrY 17674 0.03% 16733
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46914959 1 911 1 1
global segment-length histogram

Files

Filename Size md5
Thyroid_c3__mean_pred_corrected.bw 356.49 MB 94642b7685a38768b38b604d1ce05535
genomic_resource.yaml 1.28 KB 2311069d187a11a6ad1893d7a2641594
statistics/