Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thyroid/c4/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thyroid for cell cluster c4
Description
Labels
  • assay: SHARE-seq
  • cluster: Thyroid_c4
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thyroid
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thyroid_c4_mean_counts_contribs float

liu2026Multiomics_Thyroid_c4_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thyroid_c4_mean_counts_contribs [-0.0285, 0.0751]
n
87,193,477
mean
1.58e-05
sd
0.00273

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 871934772.72% 86370322
chr1 8322774 3.34% 8243367
chr2 6816044 2.81% 6751064
chr3 5492037 2.77% 5439033
chr4 4051168 2.13% 4009679
chr5 4831151 2.66% 4785102
chr6 5407175 3.17% 5356003
chr7 4440356 2.79% 4398374
chr8 3987269 2.75% 3949555
chr9 3880178 2.80% 3844220
chr10 4156751 3.11% 4117281
chr11 4498327 3.33% 4457129
chr12 4262315 3.20% 4222546
chr13 2156145 1.89% 2134615
chr14 2783199 2.60% 2757394
chr15 2749488 2.70% 2723289
chr16 2851114 3.16% 2825989
chr17 3905984 4.69% 3872065
chr18 1727187 2.15% 1709181
chr19 3750237 6.40% 3719040
chr20 2212534 3.43% 2192415
chr21 1037669 2.22% 1026971
chr22 1607358 3.16% 1592949
chrX 2236175 1.43% 2215172
chrY 30842 0.05% 27889
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 86370322 1 2711 1.01 1
global segment-length histogram

Files

Filename Size md5
Thyroid_c4__mean_counts_contribs.bw 535.49 MB b5e70fcdb4d4db91fb3e99a130e65e48
genomic_resource.yaml 1.32 KB 4b8f66c9ab1fc0a167c84f2c86466d3f
statistics/