Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Thyroid/c5/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Thyroid for cell cluster c5
Description
Labels
  • assay: SHARE-seq
  • cluster: Thyroid_c5
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Thyroid
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Thyroid_c5_mean_counts_contribs float

liu2026Multiomics_Thyroid_c5_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Thyroid_c5_mean_counts_contribs [-0.0321, 0.0843]
n
82,425,722
mean
1.43e-05
sd
0.00243

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 824257222.57% 81657071
chr1 8241781 3.31% 8164361
chr2 6384422 2.64% 6325428
chr3 5371761 2.71% 5320297
chr4 3597674 1.89% 3561147
chr5 4048855 2.23% 4011070
chr6 4722622 2.76% 4677899
chr7 4133654 2.59% 4095067
chr8 3449318 2.38% 3417143
chr9 3623432 2.62% 3590236
chr10 3928436 2.94% 3891421
chr11 4462257 3.30% 4421811
chr12 3917531 2.94% 3881861
chr13 1799620 1.57% 1781745
chr14 2559987 2.39% 2536506
chr15 2650914 2.60% 2626903
chr16 2903619 3.21% 2878342
chr17 4142385 4.98% 4104591
chr18 1587174 1.97% 1570510
chr19 3917092 6.68% 3883954
chr20 2169459 3.37% 2150021
chr21 916944 1.96% 908220
chr22 1822118 3.59% 1806179
chrX 2065750 1.32% 2046071
chrY 8917 0.02% 6288
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 81657071 1 2575 1.01 1
global segment-length histogram

Files

Filename Size md5
Thyroid_c5__mean_counts_contribs.bw 505.72 MB 1c2b9f47c272b819799cbdb45c642d28
genomic_resource.yaml 1.32 KB a89b99facff3ede75a213110ef3515b3
statistics/