Resource

Id summary/zemke2023Conserved/atac_fragments/M1_Dheni_deep2content_copy
Type fragment_score
Version 0
Summary ATAC fragments for M1_Dheni_deep2 from zemke2023Conserved.
Description
Labels
  • age: 6 y
  • assay: 10x_Multiome
  • brain_region: m1
  • cell_meta_resource_id: summary/zemke2023Conserved/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: Q21.26.019/A17112
  • modalities: ATAC
  • neun_enriched: no
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/rheMac10
  • resolution: single_nucleus
  • sample_id: M1_Dheni
  • sequencing_platform: Illumina
  • sex: M
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell GCTATAGGTGAACAAA-1, GACCTGATCGCTAGAT-1, AGTCAGGCAGCCTGCA-1, GCTCGATCAATTTAGC-1, GTGCGGTTCCTCGATC-1 (top 5 of 679635 values)
count int

count
HISTOGRAM FOR count [1, 16]
n
417,110,959
mean
1.6
sd
0.941

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 417110959
chr1 38687508
chr2 25999062
chr3 26319498
chr4 21978825
chr5 18655462
chr6 22712937
chr7 27148225
chr8 18839645
chr9 19676510
chr10 20790215
chr11 20307884
chr12 16448591
chr13 16033189
chr14 22458503
chr15 18003049
chr16 19909109
chr17 10570008
chr18 9036253
chr19 17987837
chr20 16729916
chrX 8419942
chrY 398791

Fragment lengths

fragments min max mean median
fragments 417110959 1 5113 160.58 149
global fragment-length histogram

Files

Filename Size md5
4DNFIO7P823I.tsv.gz 4.19 GB 457911d4eba98d66f7a2a98ba99a4be1
4DNFIO7P823I.tsv.gz.tbi 1.47 MB 03d9cb1ef5a4999b778a3719c29b0ca9
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.5 KB 4b4ab84c5fe3a3bead6b2b4df1d9cfac
statistics/