Resource

Id summary/zemke2023Conserved/atac_fragments/M1_donor2_neun_deepcontent_copy
Type fragment_score
Version 0
Summary ATAC fragments for M1_donor2_neun_deep from zemke2023Conserved.
Description
Labels
  • age: 29 y
  • assay: 10x_Multiome
  • brain_region: m1
  • cell_meta_resource_id: summary/zemke2023Conserved/10x_multiomics_cell_meta_data
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: H19.30.002/UW7060
  • modalities: ATAC
  • neun_enriched: yes
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: single_nucleus
  • sample_id: M1_donor2_neun
  • sequencing_platform: Illumina
  • sex: M
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range Summary
cell str

cell
HISTOGRAM FOR cell AGGATGTCATCAGTAT-1, AATTGTGTCTTGCAAA-1, GAGCTAGCATGTTGGC-1, TACCGCAAGTAAGTGG-1, TGGTGCATCAAAGGCA-1 (top 5 of 662589 values)
count int

count
HISTOGRAM FOR count [1, 101]
n
781,771,665
mean
1.58
sd
0.908

n counts fragments; sd is the population standard deviation.

Fragments

Chromosome Fragments
all chromosomes 781771665
chr1 66848624
chr2 62504093
chr3 53597889
chr4 44908970
chr5 47157084
chr6 44834435
chr7 43210109
chr8 38716933
chr9 33405481
chr10 36237016
chr11 41226038
chr12 38857743
chr13 23605169
chr14 25568911
chr15 23978464
chr16 24167602
chr17 27994992
chr18 20030208
chr19 22803489
chr20 19059427
chr21 9442340
chr22 13439621
chrX 18351910
chrY 1657327
GL000009.2 16048
GL000194.1 17938
GL000195.1 25406
GL000205.2 48038
GL000213.1 971
GL000218.1 13049
GL000219.1 14694
KI270711.1 3020
KI270713.1 10232
KI270721.1 1862
KI270726.1 157
KI270727.1 3788
KI270728.1 3459
KI270731.1 2438
KI270734.1 6690

Fragment lengths

fragments min max mean median
fragments 781771665 1 5095 215.99 173
global fragment-length histogram

Files

Filename Size md5
4DNFIOPG5HU6.tsv.gz 7.89 GB a883105a4c28560576797be3ce3cd7a2
4DNFIOPG5HU6.tsv.gz.tbi 2.12 MB 57c75e048c02557fdd95f7e137c7ef6d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.51 KB 41af5ef41890bc88a0bf7b6ddb159309
statistics/